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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Kmt2d
wikigenes
PDBj
CellType: HT22
ATCC
MeSH
RIKEN BRC
SRX5342220
GSM3592495: ChIP-seq kmt2d wt; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Kmt2d
Cell type
Cell type Class
Neural
Cell type
HT22
NA
NA
Attributes by original data submitter
Sample
source_name
HT22 hippocampal cell line
sample type
wild-type clone
genotype
wild-type
tissue
hippocampal cell line
cell line
HT22
chip antibody
KMT2D (Millipore ABE1867)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sonicated nuclear lysates were pre-cleared and histone-DNA complexes were isolated with anti-KMT2D antibody (Millipore ABE1867) and purified by DNA Clean and Concentrator (Zymo Research) NEBNext UltraII DNA Library Prep Kit for Illumina
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
24538097
Reads aligned (%)
93.1
Duplicates removed (%)
7.5
Number of peaks
2854 (qval < 1E-05)
mm9
Number of total reads
24538097
Reads aligned (%)
92.9
Duplicates removed (%)
8.2
Number of peaks
2857 (qval < 1E-05)
Base call quality data from
DBCLS SRA